Earlier, the space agency released the most detailed picture yet as it hurtled towards the dwarf planet on Tuesday.
The probe was set to grab more pictures and other data as it passed 12,500km from Pluto at 11:50 GMT (12:50 BST).
Controllers got a last health status report, before the robotic craft turned its antenna away from the Earth to concentrate on its target.
Only when New Horizons has its trove of images safely in its onboard memory will it call home again.
This is not expected to happen until just after midnight (GMT) into Wednesday.
It means there will be a long, anxious wait for everyone connected with the mission, as they hold out for a signal that will be coming from almost five billion km away.
We have completed the initial reconnaissance of the Solar System
Alan Stern, New Horizons chief scientist
But scientists already have colour data from the approach and said they might release a new picture later on Tuesday. Images set to be released on Wednesday will be more than 10 times the resolution of those already published.
New Horizons’ flyby of 2,370km-wide Pluto is a key moment in the history of space exploration.
“We have completed the initial reconnaissance of the Solar System, an endeavour started under President Kennedy more than 50 years ago and continuing to today under President Obama,” said the mission’s chief scientist Alan Stern.
“It’s really historic what the US has done, and the New Horizons team is really proud to have been able to run that anchor leg and make this accomplishment.”
It marks the fact that every body in that system – from Mercury through to Pluto – will have been visited at least once by a space probe.
“This is true exploration…that view is just the first of many rewards the team will get. Pluto is an extraordinarily complex and interesting world,” said John Grunsfeld, Nasa’s science chief.
John Grunsfeld, Nasa science chief
The information acquired on approach will be as nothing to the huge number of observations it will have acquired during the flyby. But scientists have already been attempting to interpret the data and images so far.
Dr Stern said: “On the surface we see a history of impacts, we see a history of surface activity in terms of some features we might be able to interpret as tectonic – indicating internal activity on the planet at some point in its past and maybe even in its present.”
“This is clearly a world where geology and atmosphere – climatology – play a role. Pluto has strong atmospheric cycles, it snows on the surface, these snows sublimate – go back into the atmosphere – every 248-year orbit.”
The probe will investigate not only Pluto but also its five moons: Charon, Styx, Nix, Kerberos and Hydra.
To achieve that, it had to perform a furious set of manoeuvres as it pointed every which way in the sky to get the images and other types of data it needs.
Analysis – David Shukman
The cheering and jubilation are phenomenal. There’s a powerful sense of achievement at sending a robotic craft three billion miles to Pluto. But there’s also something much more instinctive: the thrill of witnessing and sharing a great moment of discovery.
Most moving for me has been catching a few words with the son of the man who first found Pluto. Al Tombaugh is obviously delighted that a sample of his father Clyde’s ashes is on board New Horizons speeding past Pluto and now heading into the unexplored realm of the Kuiper Belt.
David Shukman talks to Al Tombaugh, the son of Pluto discoverer Clyde
I asked Al if his father would have wanted to visit the tiny world. Maybe, he said, but he was always worried about the physical strain of life as an astronaut. Another thought that’s very striking here today: so many scientists and engineers and technicians have had a hand in making this mission work, and their excitement is totally justified.
So what about the coming hours? No one here will truly relax until the next signals reach home as the spacecraft slips beyond Pluto.
Because the observations are all run on an automated command sequence, New Horizons had to fly a perfect path past Pluto, and with perfect timing – otherwise its cameras would have shot empty sky where the dwarf or its moons were expected to be.
This necessitated aiming New Horizons at a “keyhole” in space just 100km by 150km (60miles by 90 miles), and arriving at that location within a set margin of 100 seconds.
The last indications were that New Horizons was on the button of that aim point, being perhaps 70km closer to the surface of Pluto than anticipated, and arriving about 72 seconds early.
All this was achieved after a multi-billion-km flight across the Solar System lasting nine-and-a-half years.
The mission team will not celebrate until New Horizons contacts Earth again, which should happen at 00:53 GMT Wednesday (01:53 BST).
This communication will contain only engineering information on the status of the probe, but controllers should be able to tell very quickly whether the flyby sequence worked properly or not.
The first high-resolution pictures from the pass should be downlinked later on Wednesday.
There is a very small possibility that New Horizons could be lost as it flies through the Pluto system.
Any stray icy debris would have been be lethal if it had collided with the spacecraft at its 14km/s velocity (31,000mph).
“Hopefully it did [survive],” said Alan Stern, “but there is a little bit of drama.”
On Monday, the New Horizons team announced a new, more precise measurement of Pluto’s diameter at 2,370km. The probe sees the girth of Charon to be very similar to earlier estimates, at 1,208km.
- Bran writes mostly on science and is an avid reader and writer of popular science. He brings sciency a literetic emphasis bring it to mainstream media for all.
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